Record Information
Version1.0
Creation date2010-04-08 22:05:02 UTC
Update date2019-11-26 02:56:36 UTC
Primary IDFDB001615
Secondary Accession NumbersNot Available
Chemical Information
FooDB NameD-Ribose 5-phosphate
DescriptionD-Ribose 5-phosphate, also known as D-ribose-5-p, belongs to the class of organic compounds known as pentose phosphates. These are carbohydrate derivatives containing a pentose substituted by one or more phosphate groups. D-Ribose 5-phosphate is an extremely weak basic (essentially neutral) compound (based on its pKa). D-Ribose 5-phosphate exists in all living species, ranging from bacteria to humans. D-Ribose 5-phosphate has been detected, but not quantified in, milk (cow) and rices. This could make D-ribose 5-phosphate a potential biomarker for the consumption of these foods.
CAS Number3615-55-2
Structure
Thumb
Synonyms
SynonymSource
D-Ribose 5'-phosphateChEBI
D-Ribose-5-pChEBI
Ribose 5-phosphateChEBI
D-Ribose 5'-phosphoric acidGenerator
Ribose 5-phosphoric acidGenerator
D-Ribose 5-phosphoric acidGenerator
D-Ribose-5-phosphateHMDB
D-Ribose-5-phosphorateHMDB
D-Ribose-5-phosphoric acidHMDB
Ribose-5-pHMDB
Ribose-5-phosphateHMDB
Ribose-5-phosphorateHMDB
Ribose-5-phosphoric acidHMDB
Ribose-5PHMDB
Ribose-5-phosphoric acid, (D-ribose)-isomerHMDB
Ribose phosphateHMDB
Ribose-5-phosphoric acid, (D-ribofuranose)-isomerHMDB
Ribose 5-monophosphateHMDB
5-O-phosphono-D-ribosebiospider
D-Ribofuranose 5-phosphatemanual
D-ribofuranose, 5-(dihydrogen phosphate)biospider
D-Ribose 5-(dihydrogen phosphate)biospider
D-Ribose 5-phosphic acidbiospider
D-ribose-5-phosphatebiospider
D-ribose-5-phosphoratebiospider
D-ribose-5-phosphoric acidbiospider
Predicted Properties
PropertyValueSource
Water Solubility33.6 g/LALOGPS
logP-2.1ALOGPS
logP-2.4ChemAxon
logS-0.84ALOGPS
pKa (Strongest Acidic)1.22ChemAxon
pKa (Strongest Basic)-3.7ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count5ChemAxon
Polar Surface Area136.68 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity40.83 m³·mol⁻¹ChemAxon
Polarizability18.21 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Chemical FormulaC5H11O8P
IUPAC name{[(2R,3S,4R)-3,4,5-trihydroxyoxolan-2-yl]methoxy}phosphonic acid
InChI IdentifierInChI=1S/C5H11O8P/c6-3-2(1-12-14(9,10)11)13-5(8)4(3)7/h2-8H,1H2,(H2,9,10,11)/t2-,3-,4-,5?/m1/s1
InChI KeyKTVPXOYAKDPRHY-SOOFDHNKSA-N
Isomeric SMILESOC1O[C@H](COP(O)(O)=O)[C@@H](O)[C@H]1O
Average Molecular Weight230.1098
Monoisotopic Molecular Weight230.01915384
Classification
Description Belongs to the class of organic compounds known as pentose phosphates. These are carbohydrate derivatives containing a pentose substituted by one or more phosphate groups.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbohydrates and carbohydrate conjugates
Direct ParentPentose phosphates
Alternative Parents
Substituents
  • Pentose phosphate
  • Pentose-5-phosphate
  • Monosaccharide phosphate
  • Monoalkyl phosphate
  • Alkyl phosphate
  • Phosphoric acid ester
  • Organic phosphoric acid derivative
  • Tetrahydrofuran
  • 1,2-diol
  • Secondary alcohol
  • Hemiacetal
  • Polyol
  • Oxacycle
  • Organoheterocyclic compound
  • Hydrocarbon derivative
  • Organic oxide
  • Alcohol
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External Descriptors
Ontology
Disposition

Route of exposure:

Source:

Biological location:

Physico-Chemical Properties - Experimental
Physico-Chemical Properties - Experimental
PropertyValueReference
Physical stateNot Available
Physical DescriptionNot Available
Mass CompositionNot Available
Melting PointNot Available
Boiling PointNot Available
Experimental Water SolubilityNot Available
Experimental logPNot Available
Experimental pKaNot Available
Isoelectric pointNot Available
ChargeNot Available
Optical RotationNot Available
Spectroscopic UV DataNot Available
DensityNot Available
Refractive IndexNot Available
Spectra
Spectra
EI-MS/GC-MS
TypeDescriptionSplash KeyView
GC-MSD-Ribose 5-phosphate, 5 TMS, GC-MS Spectrumsplash10-014j-1942000000-8c3468eabd202324a3aeSpectrum
GC-MSD-Ribose 5-phosphate, 5 TMS, GC-MS Spectrumsplash10-0fr2-1943000000-b5d1468f33c224a23bd3Spectrum
GC-MSD-Ribose 5-phosphate, 5 TMS; 1 MEOX, GC-MS Spectrumsplash10-00di-9532000000-693524b08b2ccd6179c5Spectrum
GC-MSD-Ribose 5-phosphate, 5 TMS; 1 MEOX, GC-MS Spectrumsplash10-00di-9421000000-dbcd94d0a73f35716059Spectrum
GC-MSD-Ribose 5-phosphate, non-derivatized, GC-MS Spectrumsplash10-014j-1942000000-8c3468eabd202324a3aeSpectrum
GC-MSD-Ribose 5-phosphate, non-derivatized, GC-MS Spectrumsplash10-0fr2-1943000000-b5d1468f33c224a23bd3Spectrum
GC-MSD-Ribose 5-phosphate, non-derivatized, GC-MS Spectrumsplash10-00di-9532000000-693524b08b2ccd6179c5Spectrum
GC-MSD-Ribose 5-phosphate, non-derivatized, GC-MS Spectrumsplash10-00di-9421000000-dbcd94d0a73f35716059Spectrum
Predicted GC-MSD-Ribose 5-phosphate, non-derivatized, Predicted GC-MS Spectrum - 70eV, Positivesplash10-0002-9320000000-9b5fdcbd0e9ea3ece549Spectrum
Predicted GC-MSD-Ribose 5-phosphate, 3 TMS, Predicted GC-MS Spectrum - 70eV, Positivesplash10-06vi-9164100000-2305f99f73e0c553d514Spectrum
MS/MS
TypeDescriptionSplash KeyView
MS/MSLC-MS/MS Spectrum - Quattro_QQQ 10V, Positive (Annotated)splash10-0002-9320000000-7f3d980d223a6b9f5f3fSpectrum
MS/MSLC-MS/MS Spectrum - Quattro_QQQ 25V, Positive (Annotated)splash10-0002-9000000000-a5df0614f5cbd8b55405Spectrum
MS/MSLC-MS/MS Spectrum - LC-ESI-ITFT (LTQ Orbitrap XL, Thermo Scientfic) , Negativesplash10-056r-0090700000-ea86961dacc666b5fc7dSpectrum
MS/MSLC-MS/MS Spectrum - LC-ESI-ITFT (LTQ Orbitrap XL, Thermo Scientfic) , Negativesplash10-0002-9100000000-6cbb3e84820a37a47fbbSpectrum
MS/MSLC-MS/MS Spectrum - LC-ESI-ITFT (LTQ Orbitrap XL, Thermo Scientfic) , Negativesplash10-004i-0090000000-10949588537786dbae1eSpectrum
MS/MSLC-MS/MS Spectrum - LC-ESI-ITFT (LTQ Orbitrap XL, Thermo Scientfic) , Negativesplash10-0a4i-0000900000-10d8b4fd09ed514cc12eSpectrum
MS/MSLC-MS/MS Spectrum - LC-ESI-QTOF (UPLC Q-Tof Premier, Waters) , Negativesplash10-002b-9000000000-49264a7584727750bd70Spectrum
MS/MSLC-MS/MS Spectrum - LC-ESI-ITFT , negativesplash10-0002-9100000000-6cbb3e84820a37a47fbbSpectrum
MS/MSLC-MS/MS Spectrum - LC-ESI-ITFT , negativesplash10-004i-0090000000-10949588537786dbae1eSpectrum
MS/MSLC-MS/MS Spectrum - LC-ESI-ITFT , negativesplash10-0a4i-0000900000-10d8b4fd09ed514cc12eSpectrum
MS/MSLC-MS/MS Spectrum - LC-ESI-QTOF , negativesplash10-002b-9000000000-340deaecb0169ce2acd3Spectrum
Predicted MS/MSPredicted LC-MS/MS Spectrum - 10V, Positivesplash10-001i-1790000000-a3ced14cd6c2537c6d8fSpectrum
Predicted MS/MSPredicted LC-MS/MS Spectrum - 20V, Positivesplash10-001i-5940000000-8bcb763477232ce1dd2cSpectrum
Predicted MS/MSPredicted LC-MS/MS Spectrum - 40V, Positivesplash10-00y1-9300000000-ff5bd2489969fca00eb7Spectrum
Predicted MS/MSPredicted LC-MS/MS Spectrum - 10V, Negativesplash10-004i-7190000000-184075252146923d2684Spectrum
Predicted MS/MSPredicted LC-MS/MS Spectrum - 20V, Negativesplash10-004i-9000000000-917b1eb059131caa49acSpectrum
Predicted MS/MSPredicted LC-MS/MS Spectrum - 40V, Negativesplash10-004i-9000000000-579393c266ea056c9e74Spectrum
NMR
TypeDescriptionView
1D NMR1H NMR SpectrumSpectrum
2D NMR[1H,1H] 2D NMR SpectrumSpectrum
2D NMR[1H,13C] 2D NMR SpectrumSpectrum
ChemSpider IDNot Available
ChEMBL IDNot Available
KEGG Compound IDC00117
Pubchem Compound ID439167
Pubchem Substance IDNot Available
ChEBI ID52742
Phenol-Explorer IDNot Available
DrugBank IDNot Available
HMDB IDHMDB01548
CRC / DFC (Dictionary of Food Compounds) IDHDJ31-U:MPZ66-T
EAFUS IDNot Available
Dr. Duke IDNot Available
BIGG IDNot Available
KNApSAcK IDC00007473
HET IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
Flavornet IDNot Available
GoodScent IDNot Available
SuperScent IDNot Available
Wikipedia IDD-ribose-5-P
Phenol-Explorer Metabolite IDNot Available
Duplicate IDSNot Available
Old DFC IDSNot Available
Associated Foods
FoodContent Range AverageReference
FoodReference
Biological Effects and Interactions
Health Effects / BioactivitiesNot Available
EnzymesNot Available
PathwaysNot Available
MetabolismNot Available
BiosynthesisNot Available
Organoleptic Properties
FlavoursNot Available
Files
MSDSshow
References
Synthesis ReferenceNot Available
General ReferenceNot Available
Content Reference— Shinbo, Y., et al. 'KNApSAcK: a comprehensive species-metabolite relationship database.' Plant Metabolomics. Springer Berlin Heidelberg, 2006. 165-181.