<?xml version="1.0" encoding="UTF-8"?>
<compound>
  <version>1.0</version>
  <creation_date>2010-04-08 22:09:29 UTC</creation_date>
  <update_date>2026-09-18 19:23:45 UTC</update_date>
  <accession>FDB011145</accession>
  <name>D-Ribose</name>
  <description>A constituent of nucleic acids, several coenzymes and bacterial polysaccharides from Salmonellaand is also occurs in plant glycosides and free in plants. Food additive listed in the EAFUS Food Additive Database (Jan 2001). D-Ribose is found in many foods, some of which are garden tomato, garden onion, tarragon, and mung bean.</description>
  <synonyms>
    <synonym>(-)-Ribose</synonym>
    <synonym>(3R,4S,5R)-5-(Hydroxymethyl)tetrahydrofuran-2,3,4-triol</synonym>
    <synonym>alpha-D-Ribose</synonym>
    <synonym>alpha-D-Ribose-5</synonym>
    <synonym>alpha-delta-Ribose</synonym>
    <synonym>alpha-delta-Ribose-5</synonym>
    <synonym>D-(-)-Ribose</synonym>
    <synonym>D-Ribo-2,3,4,5-tetrahydroxyvaleraldehyde</synonym>
    <synonym>D-Ribose</synonym>
    <synonym>delta-(-)-Ribose</synonym>
    <synonym>delta-Ribo-2,3,4,5-tetrahydroxyvaleraldehyde</synonym>
    <synonym>delta-Ribose</synonym>
    <synonym>Ribose</synonym>
    <synonym>Ribose, D-</synonym>
  </synonyms>
  <chemical_formula>C5H10O5</chemical_formula>
  <average_molecular_weight>150.1299</average_molecular_weight>
  <monisotopic_moleculate_weight>150.05282343</monisotopic_moleculate_weight>
  <iupac_name>(2R,3R,4R)-2,3,4,5-tetrahydroxypentanal</iupac_name>
  <traditional_iupac>ribose</traditional_iupac>
  <cas_registry_number>613-83-2</cas_registry_number>
  <smiles>OC[C@@H](O)[C@@H](O)[C@@H](O)C=O</smiles>
  <inchi>InChI=1S/C5H10O5/c6-1-3(8)5(10)4(9)2-7/h1,3-5,7-10H,2H2/t3-,4+,5-/m0/s1</inchi>
  <inchikey>PYMYPHUHKUWMLA-LMVFSUKVSA-N</inchikey>
  <taxonomy>
    <description> belongs to the class of organic compounds known as pentoses. These are monosaccharides in which the carbohydrate moiety contains five carbon atoms.</description>
    <direct_parent>Pentoses</direct_parent>
    <kingdom>Organic compounds</kingdom>
    <super_class>Organic oxygen compounds</super_class>
    <class>Organooxygen compounds</class>
    <sub_class>Carbohydrates and carbohydrate conjugates</sub_class>
    <molecular_framework>Aliphatic acyclic compounds</molecular_framework>
    <alternative_parents>
      <alternative_parent>Alpha-hydroxyaldehydes</alternative_parent>
      <alternative_parent>Beta-hydroxy aldehydes</alternative_parent>
      <alternative_parent>Hydrocarbon derivatives</alternative_parent>
      <alternative_parent>Organic oxides</alternative_parent>
      <alternative_parent>Polyols</alternative_parent>
      <alternative_parent>Primary alcohols</alternative_parent>
      <alternative_parent>Secondary alcohols</alternative_parent>
      <alternative_parent>Short-chain aldehydes</alternative_parent>
    </alternative_parents>
    <substituents>
      <substituent>Alcohol</substituent>
      <substituent>Aldehyde</substituent>
      <substituent>Aliphatic acyclic compound</substituent>
      <substituent>Alpha-hydroxyaldehyde</substituent>
      <substituent>Beta-hydroxy aldehyde</substituent>
      <substituent>Carbonyl group</substituent>
      <substituent>Hydrocarbon derivative</substituent>
      <substituent>Organic oxide</substituent>
      <substituent>Pentose monosaccharide</substituent>
      <substituent>Polyol</substituent>
      <substituent>Primary alcohol</substituent>
      <substituent>Secondary alcohol</substituent>
      <substituent>Short-chain aldehyde</substituent>
    </substituents>
    <external_descriptors>
      <external_descriptor>D-ribose</external_descriptor>
      <external_descriptor>aldehydo-ribose</external_descriptor>
    </external_descriptors>
  </taxonomy>
  <state>Solid</state>
  <predicted_properties>
    <property>
      <kind>logp</kind>
      <value>-2.28</value>
      <source>ALOGPS</source>
    </property>
    <property>
      <kind>logs</kind>
      <value>0.40</value>
      <source>ALOGPS</source>
    </property>
    <property>
      <kind>solubility</kind>
      <value>3.80e+02 g/l</value>
      <source>ALOGPS</source>
    </property>
  </predicted_properties>
  <experimental_properties>
    <property>
      <kind>melting_point</kind>
      <value>Mp 95° (87°)</value>
    </property>
  </experimental_properties>
  <property>
    <kind>logp</kind>
    <value>-2.9</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>pka_strongest_acidic</kind>
    <value>12.33</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>pka_strongest_basic</kind>
    <value>-3</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>iupac</kind>
    <value>(2R,3R,4R)-2,3,4,5-tetrahydroxypentanal</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>average_mass</kind>
    <value>150.1299</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>mono_mass</kind>
    <value>150.05282343</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>smiles</kind>
    <value>OC[C@@H](O)[C@@H](O)[C@@H](O)C=O</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>formula</kind>
    <value>C5H10O5</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>inchi</kind>
    <value>InChI=1S/C5H10O5/c6-1-3(8)5(10)4(9)2-7/h1,3-5,7-10H,2H2/t3-,4+,5-/m0/s1</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>inchikey</kind>
    <value>PYMYPHUHKUWMLA-LMVFSUKVSA-N</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>polar_surface_area</kind>
    <value>97.99</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>refractivity</kind>
    <value>31.38</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>polarizability</kind>
    <value>13.39</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>rotatable_bond_count</kind>
    <value>4</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>acceptor_count</kind>
    <value>5</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>donor_count</kind>
    <value>4</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>physiological_charge</kind>
    <value>0</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>formal_charge</kind>
    <value>0</value>
    <source>ChemAxon</source>
  </property>
  <pathways>
    <pathway>
      <name>Pentose Phosphate Pathway</name>
      <smpdb_id>SMP00031</smpdb_id>
      <kegg_map_id>map00030</kegg_map_id>
    </pathway>
  </pathways>
  <spectra>
    <spectrum>
      <type>Specdb::CMs</type>
      <spectrum_id>1333</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::CMs</type>
      <spectrum_id>1339</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>72528</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>72529</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>72530</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>131484</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>131485</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>131486</spectrum_id>
    </spectrum>
  </spectra>
  <hmdb_id>HMDB00283</hmdb_id>
  <pubchem_compound_id/>
  <chemspider_id/>
  <kegg_id/>
  <chebi_id>47014</chebi_id>
  <biocyc_id/>
  <het_id>1GQT</het_id>
  <wikipidia/>
  <vmh_id/>
  <fbonto_id/>
  <foodb_id/>
  <general_references>
    <reference>#&lt;Reference:0x0000558be9bcec68&gt;</reference>
    <reference>#&lt;Reference:0x0000558be9bcea10&gt;</reference>
    <reference>#&lt;Reference:0x0000558be9bce7e0&gt;</reference>
    <reference>#&lt;Reference:0x0000558be9bce5b0&gt;</reference>
    <reference>#&lt;Reference:0x0000558be9bce3d0&gt;</reference>
    <reference>#&lt;Reference:0x0000558be9bce178&gt;</reference>
    <reference>#&lt;Reference:0x0000558be9bcdfc0&gt;</reference>
    <reference>#&lt;Reference:0x0000558be9bcddb8&gt;</reference>
    <reference>#&lt;Reference:0x0000558be9bcdbb0&gt;</reference>
    <reference>#&lt;Reference:0x0000558be9bcd9f8&gt;</reference>
    <reference>#&lt;Reference:0x0000558be9bcd7f0&gt;</reference>
    <reference>#&lt;Reference:0x0000558be9bcd5e8&gt;</reference>
    <reference>#&lt;Reference:0x0000558be9bcd430&gt;</reference>
    <reference>#&lt;Reference:0x0000558be9bcd228&gt;</reference>
    <reference>#&lt;Reference:0x0000558be9bcd020&gt;</reference>
    <reference>#&lt;Reference:0x0000558be9bcce68&gt;</reference>
    <reference>#&lt;Reference:0x0000558be9bccc60&gt;</reference>
    <reference>#&lt;Reference:0x0000558be9bcca30&gt;</reference>
    <reference>#&lt;Reference:0x0000558be9bcc800&gt;</reference>
    <reference>#&lt;Reference:0x0000558be9bcc580&gt;</reference>
    <reference>#&lt;Reference:0x0000558be9bcc328&gt;</reference>
    <reference>#&lt;Reference:0x0000558be9bcc0f8&gt;</reference>
    <reference>#&lt;Reference:0x0000558be9bcbea0&gt;</reference>
    <reference>#&lt;Reference:0x0000558be9bcbcc0&gt;</reference>
  </general_references>
  <foods>
    <food>
      <name>Date</name>
      <food_type>Type 1</food_type>
      <category>specific</category>
      <name_scientific>Phoenix dactylifera</name_scientific>
      <ncbi_taxonomy_id>42345</ncbi_taxonomy_id>
    </food>
    <food>
      <name>Garden onion</name>
      <food_type>Type 1</food_type>
      <category>specific</category>
      <name_scientific>Allium cepa</name_scientific>
      <ncbi_taxonomy_id>4679</ncbi_taxonomy_id>
    </food>
    <food>
      <name>Garden tomato</name>
      <food_type>Type 1</food_type>
      <category>specific</category>
      <name_scientific>Solanum lycopersicum</name_scientific>
      <ncbi_taxonomy_id>4081</ncbi_taxonomy_id>
    </food>
    <food>
      <name>Grape wine</name>
      <food_type>Type 2</food_type>
      <category>specific</category>
      <name_scientific/>
      <ncbi_taxonomy_id/>
      <average_value>0.0</average_value>
      <max_value>0.0</max_value>
      <min_value>0.0</min_value>
      <unit>mg/100 g</unit>
    </food>
    <food>
      <name>Milk (Cow)</name>
      <food_type>Type 2</food_type>
      <category>specific</category>
      <name_scientific></name_scientific>
      <ncbi_taxonomy_id/>
    </food>
    <food>
      <name>Mung bean</name>
      <food_type>Type 1</food_type>
      <category>specific</category>
      <name_scientific>Vigna radiata</name_scientific>
      <ncbi_taxonomy_id>157791</ncbi_taxonomy_id>
    </food>
    <food>
      <name>Tarragon</name>
      <food_type>Type 1</food_type>
      <category>specific</category>
      <name_scientific>Artemisia dracunculus</name_scientific>
      <ncbi_taxonomy_id>72341</ncbi_taxonomy_id>
    </food>
  </foods>
  <flavors>
  </flavors>
  <enzymes>
    <enzyme>
      <name>Ribokinase</name>
      <uniprot_id>Q9H477</uniprot_id>
      <uniprot_name/>
      <gene_name>RBKS</gene_name>
    </enzyme>
  </enzymes>
  <health_effects>
    <health_effect>
      <name>Insecticide</name>
      <id>1040</id>
      <definition>Strictly, a substance intended to kill members of the class Insecta.  In common usage, any substance used for preventing, destroying, repelling or controlling insects.</definition>
    </health_effect>
  </health_effects>
</compound>
