<?xml version="1.0" encoding="UTF-8"?>
<compound>
  <version>1.0</version>
  <creation_date>2010-04-08 22:09:29 UTC</creation_date>
  <update_date>2019-11-26 03:04:37 UTC</update_date>
  <accession>FDB011145</accession>
  <name>D-Ribose</name>
  <description>A constituent of nucleic acids, several coenzymes and bacterial polysaccharides from Salmonellaand is also occurs in plant glycosides and free in plants. Food additive listed in the EAFUS Food Additive Database (Jan 2001). D-Ribose is found in many foods, some of which are garden tomato, garden onion, tarragon, and mung bean.</description>
  <synonyms>
    <synonym>(-)-Ribose</synonym>
    <synonym>(3R,4S,5R)-5-(Hydroxymethyl)tetrahydrofuran-2,3,4-triol</synonym>
    <synonym>alpha-D-Ribose</synonym>
    <synonym>alpha-D-Ribose-5</synonym>
    <synonym>alpha-delta-Ribose</synonym>
    <synonym>alpha-delta-Ribose-5</synonym>
    <synonym>D-(-)-Ribose</synonym>
    <synonym>D-Ribo-2,3,4,5-tetrahydroxyvaleraldehyde</synonym>
    <synonym>D-Ribose</synonym>
    <synonym>delta-(-)-Ribose</synonym>
    <synonym>delta-Ribo-2,3,4,5-tetrahydroxyvaleraldehyde</synonym>
    <synonym>delta-Ribose</synonym>
    <synonym>Ribose</synonym>
    <synonym>Ribose, D-</synonym>
  </synonyms>
  <chemical_formula>C5H10O5</chemical_formula>
  <average_molecular_weight>150.1299</average_molecular_weight>
  <monisotopic_moleculate_weight>150.05282343</monisotopic_moleculate_weight>
  <iupac_name>(2R,3R,4R)-2,3,4,5-tetrahydroxypentanal</iupac_name>
  <traditional_iupac>ribose</traditional_iupac>
  <cas_registry_number>613-83-2</cas_registry_number>
  <smiles>OC[C@@H](O)[C@@H](O)[C@@H](O)C=O</smiles>
  <inchi>InChI=1S/C5H10O5/c6-1-3(8)5(10)4(9)2-7/h1,3-5,7-10H,2H2/t3-,4+,5-/m0/s1</inchi>
  <inchikey>PYMYPHUHKUWMLA-LMVFSUKVSA-N</inchikey>
  <taxonomy>
    <description> belongs to the class of organic compounds known as pentoses. These are monosaccharides in which the carbohydrate moiety contains five carbon atoms.</description>
    <direct_parent>Pentoses</direct_parent>
    <kingdom>Organic compounds</kingdom>
    <super_class>Organic oxygen compounds</super_class>
    <class>Organooxygen compounds</class>
    <sub_class>Carbohydrates and carbohydrate conjugates</sub_class>
    <molecular_framework>Aliphatic acyclic compounds</molecular_framework>
    <alternative_parents>
      <alternative_parent>Alpha-hydroxyaldehydes</alternative_parent>
      <alternative_parent>Beta-hydroxy aldehydes</alternative_parent>
      <alternative_parent>Hydrocarbon derivatives</alternative_parent>
      <alternative_parent>Organic oxides</alternative_parent>
      <alternative_parent>Polyols</alternative_parent>
      <alternative_parent>Primary alcohols</alternative_parent>
      <alternative_parent>Secondary alcohols</alternative_parent>
      <alternative_parent>Short-chain aldehydes</alternative_parent>
    </alternative_parents>
    <substituents>
      <substituent>Alcohol</substituent>
      <substituent>Aldehyde</substituent>
      <substituent>Aliphatic acyclic compound</substituent>
      <substituent>Alpha-hydroxyaldehyde</substituent>
      <substituent>Beta-hydroxy aldehyde</substituent>
      <substituent>Carbonyl group</substituent>
      <substituent>Hydrocarbon derivative</substituent>
      <substituent>Organic oxide</substituent>
      <substituent>Pentose monosaccharide</substituent>
      <substituent>Polyol</substituent>
      <substituent>Primary alcohol</substituent>
      <substituent>Secondary alcohol</substituent>
      <substituent>Short-chain aldehyde</substituent>
    </substituents>
    <external_descriptors>
      <external_descriptor>D-ribose</external_descriptor>
      <external_descriptor>aldehydo-ribose</external_descriptor>
    </external_descriptors>
  </taxonomy>
  <state>Solid</state>
  <predicted_properties>
    <property>
      <kind>logp</kind>
      <value>-2.28</value>
      <source>ALOGPS</source>
    </property>
    <property>
      <kind>logs</kind>
      <value>0.40</value>
      <source>ALOGPS</source>
    </property>
    <property>
      <kind>solubility</kind>
      <value>3.80e+02 g/l</value>
      <source>ALOGPS</source>
    </property>
  </predicted_properties>
  <experimental_properties>
    <property>
      <kind>melting_point</kind>
      <value>Mp 95° (87°)</value>
    </property>
  </experimental_properties>
  <property>
    <kind>logp</kind>
    <value>-2.9</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>pka_strongest_acidic</kind>
    <value>12.33</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>pka_strongest_basic</kind>
    <value>-3</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>iupac</kind>
    <value>(2R,3R,4R)-2,3,4,5-tetrahydroxypentanal</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>average_mass</kind>
    <value>150.1299</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>mono_mass</kind>
    <value>150.05282343</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>smiles</kind>
    <value>OC[C@@H](O)[C@@H](O)[C@@H](O)C=O</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>formula</kind>
    <value>C5H10O5</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>inchi</kind>
    <value>InChI=1S/C5H10O5/c6-1-3(8)5(10)4(9)2-7/h1,3-5,7-10H,2H2/t3-,4+,5-/m0/s1</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>inchikey</kind>
    <value>PYMYPHUHKUWMLA-LMVFSUKVSA-N</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>polar_surface_area</kind>
    <value>97.99</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>refractivity</kind>
    <value>31.38</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>polarizability</kind>
    <value>13.39</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>rotatable_bond_count</kind>
    <value>4</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>acceptor_count</kind>
    <value>5</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>donor_count</kind>
    <value>4</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>physiological_charge</kind>
    <value>0</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>formal_charge</kind>
    <value>0</value>
    <source>ChemAxon</source>
  </property>
  <pathways>
    <pathway>
      <name>Pentose Phosphate Pathway</name>
      <smpdb_id>SMP00031</smpdb_id>
      <kegg_map_id>map00030</kegg_map_id>
    </pathway>
  </pathways>
  <spectra>
    <spectrum>
      <type>Specdb::CMs</type>
      <spectrum_id>1333</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::CMs</type>
      <spectrum_id>1339</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>72528</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>72529</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>72530</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>131484</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>131485</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>131486</spectrum_id>
    </spectrum>
  </spectra>
  <hmdb_id>HMDB00283</hmdb_id>
  <pubchem_compound_id/>
  <chemspider_id/>
  <kegg_id/>
  <chebi_id>47014</chebi_id>
  <biocyc_id/>
  <het_id>1GQT</het_id>
  <wikipidia/>
  <vmh_id/>
  <fbonto_id/>
  <foodb_id/>
  <general_references>
    <reference>#&lt;Reference:0x000055ce321adaa0&gt;</reference>
    <reference>#&lt;Reference:0x000055ce321ad8e8&gt;</reference>
    <reference>#&lt;Reference:0x000055ce321ad730&gt;</reference>
    <reference>#&lt;Reference:0x000055ce321ad578&gt;</reference>
    <reference>#&lt;Reference:0x000055ce321ad3c0&gt;</reference>
    <reference>#&lt;Reference:0x000055ce321ad208&gt;</reference>
    <reference>#&lt;Reference:0x000055ce321ad050&gt;</reference>
    <reference>#&lt;Reference:0x000055ce321ace98&gt;</reference>
    <reference>#&lt;Reference:0x000055ce321acce0&gt;</reference>
    <reference>#&lt;Reference:0x000055ce321acb28&gt;</reference>
    <reference>#&lt;Reference:0x000055ce321ac970&gt;</reference>
    <reference>#&lt;Reference:0x000055ce321ac790&gt;</reference>
    <reference>#&lt;Reference:0x000055ce321ac5d8&gt;</reference>
    <reference>#&lt;Reference:0x000055ce321ac420&gt;</reference>
    <reference>#&lt;Reference:0x000055ce321ac268&gt;</reference>
    <reference>#&lt;Reference:0x000055ce321ac0b0&gt;</reference>
    <reference>#&lt;Reference:0x000055ce321abea8&gt;</reference>
    <reference>#&lt;Reference:0x000055ce321abcf0&gt;</reference>
    <reference>#&lt;Reference:0x000055ce321abb38&gt;</reference>
    <reference>#&lt;Reference:0x000055ce321ab980&gt;</reference>
    <reference>#&lt;Reference:0x000055ce321ab7c8&gt;</reference>
    <reference>#&lt;Reference:0x000055ce321ab610&gt;</reference>
    <reference>#&lt;Reference:0x000055ce321ab458&gt;</reference>
    <reference>#&lt;Reference:0x000055ce321ab2a0&gt;</reference>
  </general_references>
  <foods>
    <food>
      <name>Date</name>
      <food_type>Type 1</food_type>
      <category>specific</category>
      <name_scientific>Phoenix dactylifera</name_scientific>
      <ncbi_taxonomy_id>42345</ncbi_taxonomy_id>
    </food>
    <food>
      <name>Garden onion</name>
      <food_type>Type 1</food_type>
      <category>specific</category>
      <name_scientific>Allium cepa</name_scientific>
      <ncbi_taxonomy_id>4679</ncbi_taxonomy_id>
    </food>
    <food>
      <name>Garden tomato</name>
      <food_type>Type 1</food_type>
      <category>specific</category>
      <name_scientific>Solanum lycopersicum</name_scientific>
      <ncbi_taxonomy_id>4081</ncbi_taxonomy_id>
    </food>
    <food>
      <name>Grape wine</name>
      <food_type>Type 2</food_type>
      <category>specific</category>
      <name_scientific/>
      <ncbi_taxonomy_id/>
      <average_value>0.0</average_value>
      <max_value>0.0</max_value>
      <min_value>0.0</min_value>
      <unit>mg/100 g</unit>
    </food>
    <food>
      <name>Milk (Cow)</name>
      <food_type>Type 2</food_type>
      <category>specific</category>
      <name_scientific></name_scientific>
      <ncbi_taxonomy_id/>
    </food>
    <food>
      <name>Mung bean</name>
      <food_type>Type 1</food_type>
      <category>specific</category>
      <name_scientific>Vigna radiata</name_scientific>
      <ncbi_taxonomy_id>157791</ncbi_taxonomy_id>
    </food>
    <food>
      <name>Tarragon</name>
      <food_type>Type 1</food_type>
      <category>specific</category>
      <name_scientific>Artemisia dracunculus</name_scientific>
      <ncbi_taxonomy_id>72341</ncbi_taxonomy_id>
    </food>
  </foods>
  <flavors>
  </flavors>
  <enzymes>
    <enzyme>
      <name>Ribokinase</name>
      <uniprot_id>Q9H477</uniprot_id>
      <uniprot_name/>
      <gene_name>RBKS</gene_name>
    </enzyme>
  </enzymes>
  <health_effects>
  </health_effects>
</compound>
